ctcRbase

Entry Detail

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General Information

Database ID: SKCM04624 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CHD8 Full Name: chromodomain helicase DNA binding protein 8 Category: mRNA Synonyms: AUTS18|HELSNF1 Chromosome: chr14 Strand: - Coordinate: Start Site(bp): 21385194 End Site(bp): 21456126 Gene Summary: This gene encodes a member of the chromodomain-helicase-DNA binding protein family, which is characterized by a SNF2-like domain and two chromatin organization modifier domains. The encoded protein also contains brahma and kismet domains, which are common to the subfamily of chromodomain-helicase-DNA binding proteins to which this protein belongs. This gene has been shown to function in several processes that include transcriptional regulation, epigenetic remodeling, promotion of cell proliferation, and regulation of RNA synthesis. Allelic variants of this gene are associated with autism spectrum disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2016] External Links: Ensembl ID: ENSG00000100888 HGNC ID: HGNC:20153 Entrez Gene: 57680

Expression Profile of CHD8 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-132-3p YES NO YES hsa-miR-140-5p YES YES NO hsa-miR-155-5p YES YES YES hsa-miR-15a-5p YES YES NO hsa-miR-15b-5p YES YES NO hsa-miR-16-5p YES YES NO hsa-miR-194-5p YES YES YES hsa-miR-195-5p YES YES NO hsa-miR-212-3p YES NO YES hsa-miR-221-3p YES YES YES hsa-miR-222-3p YES YES YES hsa-miR-365a-3p YES YES YES hsa-miR-424-5p YES YES NO hsa-miR-497-5p YES YES NO hsa-miR-503-5p YES YES NO hsa-miR-760 YES NO YES hsa-miR-873-5p YES YES YES Display: