Entry Detail



General Information

Database ID:SKCM04815
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:ATXN7
Full Name:ataxin 7
Category:mRNA
Synonyms:ADCAII|OPCA3|SCA7|SGF73
Chromosome:chr3
Strand:+
Coordinate:
Start Site(bp):63864557End Site(bp):64003462
Gene Summary:The autosomal dominant cerebellar ataxias (ADCA) are a heterogeneous group of neurodegenerative disorders characterized by progressive degeneration of the cerebellum, brain stem and spinal cord. Clinically, ADCA has been divided into three groups: ADCA types I-III. ADCAI is genetically heterogeneous, with five genetic loci, designated spinocerebellar ataxia (SCA) 1, 2, 3, 4 and 6, being assigned to five different chromosomes. ADCAII, which always presents with retinal degeneration (SCA7), and ADCAIII often referred to as the 'pure' cerebellar syndrome (SCA5), are most likely homogeneous disorders. Several SCA genes have been cloned and shown to contain CAG repeats in their coding regions. ADCA is caused by the expansion of the CAG repeats, producing an elongated polyglutamine tract in the corresponding protein. The expanded repeats are variable in size and unstable, usually increasing in size when transmitted to successive generations. This locus has been mapped to chromosome 3, and it has been determined that the diseased allele associated with spinocerebellar ataxia-7 contains 37-306 CAG repeats (near the N-terminus), compared to 4-35 in the normal allele. The encoded protein is a component of the SPT3/TAF9/GCN5 acetyltransferase (STAGA) and TBP-free TAF-containing (TFTC) chromatin remodeling complexes, and it thus plays a role in transcriptional regulation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]
External Links:
Ensembl ID:ENSG00000163635
HGNC ID:HGNC:10560
Entrez Gene:6314



Expression Profile of ATXN7 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-103a-3p
NO
YES
YES
hsa-miR-107
NO
YES
YES
hsa-miR-10a-5p
NO
YES
YES
hsa-miR-10b-5p
NO
YES
YES
hsa-miR-132-3p
NO
YES
YES
hsa-miR-139-5p
YES
YES
NO
hsa-miR-141-3p
YES
YES
YES
hsa-miR-181a-5p
NO
YES
YES
hsa-miR-181b-5p
NO
YES
YES
hsa-miR-181c-5p
NO
YES
YES
hsa-miR-181d-5p
NO
YES
YES
hsa-miR-186-5p
NO
YES
YES
hsa-miR-199a-5p
YES
YES
YES
hsa-miR-199b-5p
YES
YES
YES
hsa-miR-19a-3p
NO
YES
YES
hsa-miR-19b-3p
NO
YES
YES
hsa-miR-200a-3p
YES
YES
YES
hsa-miR-212-3p
NO
YES
YES
hsa-miR-23a-3p
NO
YES
YES
hsa-miR-23b-3p
NO
YES
YES
hsa-miR-25-3p
NO
YES
YES
hsa-miR-32-5p
NO
YES
YES
hsa-miR-340-5p
NO
YES
NO
hsa-miR-34a-5p
NO
YES
YES
hsa-miR-34c-5p
NO
YES
YES
hsa-miR-363-3p
NO
YES
YES
hsa-miR-365a-3p
NO
YES
YES
hsa-miR-367-3p
NO
YES
YES
hsa-miR-374a-5p
NO
YES
YES
hsa-miR-374b-5p
NO
YES
YES
hsa-miR-449a
NO
YES
YES
hsa-miR-449b-5p
NO
YES
YES
hsa-miR-494-3p
YES
YES
NO
hsa-miR-495-3p
YES
NO
NO
hsa-miR-543
YES
YES
NO
hsa-miR-7-5p
NO
YES
YES
hsa-miR-92a-3p
NO
YES
YES
hsa-miR-92b-3p
NO
YES
YES
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