ctcRbase

Entry Detail

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General Information

Database ID: SKCM04820 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VPS54 Full Name: VPS54, GARP complex subunit Category: mRNA Synonyms: HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L Chromosome: chr2 Strand: - Coordinate: Start Site(bp): 63892146 End Site(bp): 64019072 Gene Summary: This gene encodes for a protein that in yeast forms part of a trimeric vacuolar-protein-sorting complex that is required for retrograde transport of proteins from prevacuoles to the late Golgi compartment. As in yeast, mammalian Vps54 proteins contain a coiled-coil region and dileucine motifs. Alternative splicing results in multiple transcript variants encoding different isoforms [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000143952 HGNC ID: HGNC:18652 Entrez Gene: 51542

Expression Profile of VPS54 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-139-5p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-145-5p YES YES NO hsa-miR-18a-5p YES YES NO hsa-miR-18b-5p YES YES NO hsa-miR-25-3p YES YES YES hsa-miR-32-5p YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-340-5p YES YES YES hsa-miR-363-3p YES YES YES hsa-miR-367-3p YES YES YES hsa-miR-376a-3p YES YES YES hsa-miR-376b-3p YES YES YES hsa-miR-384 YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-7-5p YES YES NO hsa-miR-92a-3p YES YES YES hsa-miR-92b-3p YES YES YES Display: