ctcRbase

Entry Detail

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General Information

Database ID: SKCM04878 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SPATA5 Full Name: spermatogenesis associated 5 Category: mRNA Synonyms: AFG2|EHLMRS|SPAF Chromosome: chr4 Strand: + Coordinate: Start Site(bp): 122923074 End Site(bp): 123319450 Gene Summary: This gene encodes a member of the ATPase associated with diverse activities family, whose members are defined by a highly conserved ATPase domain. Members of this family participate in diverse cellular processes that include membrane fusion, DNA replication, microtubule severing, and protein degradation. The protein encoded by this gene has a putative mitochondrial targeting sequence and has been proposed to function in maintenance of mitochondrial function and integrity during mouse spermatogenesis. Allelic variants in this gene have been associated with epilepsy, hearing loss, and cognitive disability syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016] External Links: Ensembl ID: ENSG00000145375 HGNC ID: HGNC:18119 Entrez Gene: 166378

Expression Profile of SPATA5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-140-5p YES YES NO hsa-miR-186-5p YES NO YES hsa-miR-190a-5p YES YES NO hsa-miR-190b YES YES NO hsa-miR-199a-5p YES YES NO hsa-miR-199b-5p YES YES NO hsa-miR-29b-3p YES YES NO hsa-miR-326 YES YES NO hsa-miR-330-5p YES YES NO hsa-miR-425-5p YES YES NO hsa-miR-454-3p YES YES NO hsa-miR-494-3p YES YES YES hsa-miR-496 YES YES NO hsa-miR-543 YES YES NO Display: