ctcRbase

Entry Detail

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General Information

Database ID: SKCM05006 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: BLOC1S5-TXNDC5 Full Name: BLOC1S5-TXNDC5 readthrough (NMD candidate) Category: mRNA Synonyms: MUTED-TXNDC5 Chromosome: chr6 Strand: - Coordinate: Start Site(bp): 7881522 End Site(bp): 8064364 Gene Summary: This locus represents naturally occurring read-through transcription between the neighboring MUTED (muted homolog) and TXNDC5 (thioredoxin domain containing 5) genes on chromosome 6. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is unlikely to produce a protein product. [provided by RefSeq, Dec 2010] External Links: Ensembl ID: ENSG00000259040 HGNC ID: HGNC:42001 Entrez Gene: 100526836

Expression Profile of BLOC1S5-TXNDC5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-124-3p YES NO YES hsa-miR-128-3p YES YES NO hsa-miR-129-5p YES YES NO hsa-miR-140-5p YES YES NO hsa-miR-144-3p YES YES NO hsa-miR-183-5p YES NO YES hsa-miR-186-5p YES YES NO hsa-miR-218-5p YES YES NO hsa-miR-299-3p YES YES NO hsa-miR-300 YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-324-5p YES YES NO hsa-miR-342-3p YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-382-5p YES YES NO hsa-miR-383-5p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-7-5p YES YES NO hsa-miR-875-5p YES YES NO hsa-miR-9-5p YES YES YES Display: