ctcRbase

Entry Detail

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General Information

Database ID: SKCM05178 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: FARP1 Full Name: FERM, ARH/RhoGEF and pleckstrin domain protein 1 Category: mRNA Synonyms: CDEP|FARP1-IT1|PLEKHC2|PPP1R75 Chromosome: chr13 Strand: + Coordinate: Start Site(bp): 98142562 End Site(bp): 98455176 Gene Summary: This gene encodes a protein containing a FERM (4.2, exrin, radixin, moesin) domain, a Dbl homology domain, and two pleckstrin homology domains. These domains are found in guanine nucleotide exchange factors and proteins that link the cytoskeleton to the cell membrane. The encoded protein functions in neurons to promote dendritic growth. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2013] External Links: Ensembl ID: ENSG00000152767 HGNC ID: HGNC:3591 Entrez Gene: 10160

Expression Profile of FARP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES NO YES hsa-let-7b-5p YES NO YES hsa-let-7c-5p YES NO YES hsa-let-7d-5p YES NO YES hsa-let-7e-5p YES NO YES hsa-let-7f-5p YES NO YES hsa-let-7g-5p YES NO YES hsa-let-7i-5p YES NO YES hsa-miR-101-3p YES YES NO hsa-miR-124-3p YES NO YES hsa-miR-1271-5p YES YES YES hsa-miR-128-3p YES YES NO hsa-miR-144-3p YES YES NO hsa-miR-147a YES NO NO hsa-miR-182-5p YES NO YES hsa-miR-193a-3p YES YES YES hsa-miR-193b-3p YES NO YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-204-5p YES YES YES hsa-miR-211-5p YES YES YES hsa-miR-339-5p YES YES NO hsa-miR-411-5p YES YES NO hsa-miR-429 YES YES YES hsa-miR-495-3p YES YES NO hsa-miR-506-3p YES NO YES hsa-miR-653-5p YES YES NO hsa-miR-874-3p YES YES YES hsa-miR-96-5p YES YES YES hsa-miR-98-5p YES NO YES Display: