Entry Detail



General Information

Database ID:SKCM05211
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:TFIP11
Full Name:tuftelin interacting protein 11
Category:mRNA
Synonyms:NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6
Chromosome:chr22
Strand:-
Coordinate:
Start Site(bp):26491225End Site(bp):26512505
Gene Summary:This gene encodes a protein component of the spliceosome that promotes the release of the lariat-intron during late-stage splicing through the recruitment of a pre-mRNA splicing factor called DEAH-box helicase 15. The encoded protein contains a G-patch domain, a hallmark of RNA-processing proteins, that binds DEAH-box helicase 15. This protein contains an atypical nuclear localization sequence as well as a nuclear speckle-targeting sequence, enabling it to localize to distinct speckled regions within the cell nucleus. Polymorphisms in this gene are associated with dental caries suggesting a role in amelogenesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]
External Links:
Ensembl ID:ENSG00000100109
HGNC ID:HGNC:17165
Entrez Gene:24144



Expression Profile of TFIP11 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-101-3p
YES
YES
NO
hsa-miR-18a-5p
YES
YES
NO
hsa-miR-18b-5p
YES
YES
NO
hsa-miR-200b-3p
YES
YES
NO
hsa-miR-200c-3p
YES
YES
NO
hsa-miR-429
YES
YES
NO
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