ctcRbase

Entry Detail

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General Information

Database ID: SKCM05214 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SYNJ2 Full Name: synaptojanin 2 Category: mRNA Synonyms: INPP5H Chromosome: chr6 Strand: + Coordinate: Start Site(bp): 157981887 End Site(bp): 158099176 Gene Summary: The gene is a member of the inositol-polyphosphate 5-phosphatase family. The encoded protein interacts with the ras-related C3 botulinum toxin substrate 1, which causes translocation of the encoded protein to the plasma membrane where it inhibits clathrin-mediated endocytosis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2010] External Links: Ensembl ID: ENSG00000078269 HGNC ID: HGNC:11504 Entrez Gene: 8871

Expression Profile of SYNJ2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1-3p YES YES NO hsa-miR-143-3p YES YES NO hsa-miR-146a-5p YES YES NO hsa-miR-146b-5p YES YES NO hsa-miR-183-5p YES YES NO hsa-miR-192-5p YES YES NO hsa-miR-206 YES YES NO hsa-miR-215-5p YES YES NO hsa-miR-218-5p YES YES YES hsa-miR-24-3p YES YES NO hsa-miR-28-5p YES YES NO hsa-miR-372-3p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-542-3p YES YES YES hsa-miR-613 YES YES NO hsa-miR-708-5p YES YES NO Display: