ctcRbase

Entry Detail

---



General Information

Database ID: SKCM05239 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RC3H1 Full Name: ring finger and CCCH-type domains 1 Category: mRNA Synonyms: RNF198|ROQUIN Chromosome: chr1 Strand: - Coordinate: Start Site(bp): 173931214 End Site(bp): 174022297 Gene Summary: This gene encodes a protein containing RING-type and C3H1-type zinc finger motifs. The encoded protein recognizes and binds to a constitutive decay element (CDE) in the 3' UTR of mRNAs, leading to mRNA deadenylation and degradation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014] External Links: Ensembl ID: ENSG00000135870 HGNC ID: HGNC:29434 Entrez Gene: 149041

Expression Profile of RC3H1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1298-5p YES NO YES hsa-miR-140-3p YES NO YES hsa-miR-140-5p YES NO YES hsa-miR-142-5p YES NO YES hsa-miR-144-3p YES NO YES hsa-miR-148a-3p YES NO YES hsa-miR-148b-3p YES NO YES hsa-miR-150-5p YES YES YES hsa-miR-152-3p YES NO YES hsa-miR-214-3p YES YES NO hsa-miR-216a-5p YES NO YES hsa-miR-216b-5p YES NO YES hsa-miR-219a-2-3p YES NO YES hsa-miR-223-3p YES NO YES hsa-miR-24-3p YES YES YES hsa-miR-27a-3p YES NO YES hsa-miR-27b-3p YES NO YES hsa-miR-300 YES YES YES hsa-miR-369-3p YES NO YES hsa-miR-374a-5p YES YES YES hsa-miR-374b-5p YES YES YES hsa-miR-381-3p YES YES YES hsa-miR-410-3p YES NO YES hsa-miR-455-5p YES NO YES hsa-miR-485-5p YES NO YES hsa-miR-487a-3p YES NO YES hsa-miR-625-5p YES NO NO hsa-miR-668-3p YES NO YES hsa-miR-875-5p YES YES YES hsa-miR-876-5p YES NO YES hsa-miR-9-5p YES NO YES Display: