Entry Detail



General Information

Database ID:SKCM05299
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:PKD1
Full Name:polycystin 1, transient receptor potential channel interacting
Category:mRNA
Synonyms:PBP|PC1|Pc-1|TRPP1
Chromosome:chr16
Strand:-
Coordinate:
Start Site(bp):2088710End Site(bp):2135898
Gene Summary:This gene encodes a member of the polycystin protein family. The encoded glycoprotein contains a large N-terminal extracellular region, multiple transmembrane domains and a cytoplasmic C-tail. It is an integral membrane protein that functions as a regulator of calcium permeable cation channels and intracellular calcium homoeostasis. It is also involved in cell-cell/matrix interactions and may modulate G-protein-coupled signal-transduction pathways. It plays a role in renal tubular development, and mutations in this gene cause autosomal dominant polycystic kidney disease type 1 (ADPKD1). ADPKD1 is characterized by the growth of fluid-filled cysts that replace normal renal tissue and result in end-stage renal failure. Splice variants encoding different isoforms have been noted for this gene. Also, six pseudogenes, closely linked in a known duplicated region on chromosome 16p, have been described. [provided by RefSeq, Oct 2008]
External Links:
Ensembl ID:ENSG00000008710
HGNC ID:HGNC:9008
Entrez Gene:5310



Expression Profile of PKD1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-106a-5p
YES
YES
YES
hsa-miR-106b-5p
YES
YES
YES
hsa-miR-1224-5p
YES
NO
YES
hsa-miR-128-3p
YES
YES
NO
hsa-miR-17-5p
YES
YES
YES
hsa-miR-200b-3p
YES
YES
YES
hsa-miR-200c-3p
YES
YES
YES
hsa-miR-20a-5p
YES
YES
YES
hsa-miR-20b-5p
YES
YES
YES
hsa-miR-302a-3p
YES
YES
YES
hsa-miR-302b-3p
YES
YES
YES
hsa-miR-302c-3p
YES
YES
YES
hsa-miR-302d-3p
YES
YES
YES
hsa-miR-302e
YES
YES
YES
hsa-miR-326
YES
YES
NO
hsa-miR-330-5p
YES
YES
NO
hsa-miR-372-3p
YES
YES
YES
hsa-miR-373-3p
YES
YES
YES
hsa-miR-429
YES
YES
YES
hsa-miR-519d-3p
YES
YES
YES
hsa-miR-520a-3p
YES
YES
YES
hsa-miR-520b
YES
YES
YES
hsa-miR-520c-3p
YES
YES
YES
hsa-miR-520d-3p
YES
YES
YES
hsa-miR-520e
YES
YES
YES
hsa-miR-93-5p
YES
YES
YES
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