ctcRbase

Entry Detail

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General Information

Database ID: SKCM05388 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: NCBP1 Full Name: nuclear cap binding protein subunit 1 Category: mRNA Synonyms: CBP80|NCBP|Sto1 Chromosome: chr9 Strand: + Coordinate: Start Site(bp): 97633626 End Site(bp): 97673748 Gene Summary: The product of this gene is a component of the nuclear cap-binding protein complex (CBC), which binds to the monomethylated 5' cap of nascent pre-mRNA in the nucleoplasm. The encoded protein promotes high-affinity mRNA-cap binding and associates with the CTD of RNA polymerase II. The CBC promotes pre-mRNA splicing, 3'-end processing, RNA nuclear export, and nonsense-mediated mRNA decay. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000136937 HGNC ID: HGNC:7658 Entrez Gene: 4686

Expression Profile of NCBP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-25-3p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-32-5p YES YES NO hsa-miR-363-3p YES YES NO hsa-miR-367-3p YES YES NO hsa-miR-371a-5p YES YES NO hsa-miR-374a-5p YES YES YES hsa-miR-374b-5p YES YES YES hsa-miR-384 YES YES NO hsa-miR-488-3p YES YES YES hsa-miR-495-3p YES YES NO hsa-miR-543 YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-875-5p YES YES YES hsa-miR-92a-3p YES YES NO hsa-miR-92b-3p YES YES NO Display: