ctcRbase

Entry Detail

---



General Information

Database ID: SKCM05444 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SEC16A Full Name: SEC16 homolog A, endoplasmic reticulum export factor Category: mRNA Synonyms: KIAA0310|SEC16L|p250 Chromosome: chr9 Strand: - Coordinate: Start Site(bp): 136440096 End Site(bp): 136483759 Gene Summary: This gene encodes a protein that forms part of the Sec16 complex. This protein has a role in protein transport from the endoplasmic reticulum (ER) to the Golgi and mediates COPII vesicle formation at the transitional ER. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Feb 2013] External Links: Ensembl ID: ENSG00000148396 HGNC ID: HGNC:29006 Entrez Gene: 9919

Expression Profile of SEC16A Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-132-3p YES YES YES hsa-miR-17-5p YES YES NO hsa-miR-18a-5p YES YES NO hsa-miR-18b-5p YES YES NO hsa-miR-194-5p YES YES NO hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-212-3p YES YES YES hsa-miR-224-5p YES YES NO hsa-miR-28-5p YES YES NO hsa-miR-296-3p YES YES NO hsa-miR-34a-5p YES NO YES hsa-miR-34c-5p YES NO YES hsa-miR-421 YES YES NO hsa-miR-449a YES NO YES hsa-miR-449b-5p YES NO YES hsa-miR-485-5p YES YES NO hsa-miR-488-3p YES YES NO hsa-miR-490-3p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-543 YES YES NO hsa-miR-708-5p YES YES NO hsa-miR-93-5p YES YES NO Display: