ctcRbase

Entry Detail

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General Information

Database ID: SKCM05467 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VPS36 Full Name: vacuolar protein sorting 36 homolog Category: mRNA Synonyms: C13orf9|CGI-145|EAP45 Chromosome: chr13 Strand: - Coordinate: Start Site(bp): 52412602 End Site(bp): 52450628 Gene Summary: This gene encodes a protein that is a subunit of the endosomal sorting complex required for transport II (ESCRT-II). This protein complex functions in sorting of ubiquitinated membrane proteins during endocytosis. A similar protein complex in rat is associated with RNA polymerase elongation factor II. [provided by RefSeq, Aug 2013] External Links: Ensembl ID: ENSG00000136100 HGNC ID: HGNC:20312 Entrez Gene: 51028

Expression Profile of VPS36 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-125a-5p YES YES YES hsa-miR-125b-5p YES YES YES hsa-miR-129-5p YES YES YES hsa-miR-136-5p YES YES NO hsa-miR-137 YES YES NO hsa-miR-138-5p YES YES NO hsa-miR-147a YES NO NO hsa-miR-155-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-194-5p YES YES NO hsa-miR-197-3p YES YES NO hsa-miR-216b-5p YES YES NO hsa-miR-24-3p YES YES NO hsa-miR-25-3p YES YES NO hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-30a-5p YES YES NO hsa-miR-30b-5p YES YES NO hsa-miR-30c-5p YES YES NO hsa-miR-30d-5p YES YES NO hsa-miR-30e-5p YES YES NO hsa-miR-320a YES NO YES hsa-miR-320b YES NO YES hsa-miR-320c YES NO YES hsa-miR-320d YES NO YES hsa-miR-32-5p YES YES NO hsa-miR-326 YES YES YES hsa-miR-330-5p YES YES YES hsa-miR-363-3p YES YES NO hsa-miR-365a-3p YES YES YES hsa-miR-367-3p YES YES NO hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-496 YES YES NO hsa-miR-542-3p YES YES YES hsa-miR-599 YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-92a-3p YES YES NO hsa-miR-92b-3p YES YES NO Display: