ctcRbase

Entry Detail

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General Information

Database ID: SKCM05484 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SAFB2 Full Name: scaffold attachment factor B2 Category: mRNA Synonyms: - Chromosome: chr19 Strand: - Coordinate: Start Site(bp): 5586999 End Site(bp): 5624046 Gene Summary: The protein encoded by this gene, along with its paralog (scaffold attachment factor B1), is a repressor of estrogen receptor alpha. The encoded protein binds scaffold/matrix attachment region (S/MAR) DNA and is involved in cell cycle regulation, apoptosis, differentiation, the stress response, and regulation of immune genes. [provided by RefSeq, May 2016] External Links: Ensembl ID: ENSG00000130254 HGNC ID: HGNC:21605 Entrez Gene: 9667

Expression Profile of SAFB2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-1-3p YES YES YES hsa-miR-17-5p YES YES NO hsa-miR-206 YES YES YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-30a-5p YES YES NO hsa-miR-30b-5p YES YES NO hsa-miR-30c-5p YES YES NO hsa-miR-30d-5p YES YES NO hsa-miR-30e-5p YES YES NO hsa-miR-365a-3p YES YES NO hsa-miR-421 YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-613 YES YES YES hsa-miR-876-5p YES YES NO hsa-miR-93-5p YES YES NO Display: