ctcRbase

Entry Detail

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General Information

Database ID: SKCM05560 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SLC33A1 Full Name: solute carrier family 33 member 1 Category: mRNA Synonyms: ACATN|AT-1|AT1|CCHLND|SPG42 Chromosome: chr3 Strand: - Coordinate: Start Site(bp): 155821024 End Site(bp): 155854429 Gene Summary: The protein encoded by this gene is required for the formation of O-acetylated (Ac) gangliosides. The encoded protein is predicted to contain 6 to 10 transmembrane domains, and a leucine zipper motif in transmembrane domain III. Defects in this gene have been reported to cause spastic paraplegia autosomal dominant type 42 (SPG42) in one Chinese family, but not in similar patients of European descent. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2010] External Links: Ensembl ID: ENSG00000169359 HGNC ID: HGNC:95 Entrez Gene: 9197

Expression Profile of SLC33A1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES YES NO hsa-miR-1271-5p YES YES YES hsa-miR-1297 NO YES YES hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-136-5p YES YES NO hsa-miR-182-5p YES YES YES hsa-miR-192-5p YES YES NO hsa-miR-199a-3p YES NO YES hsa-miR-199b-3p YES NO YES hsa-miR-215-5p YES YES NO hsa-miR-223-3p YES YES NO hsa-miR-26a-5p NO YES YES hsa-miR-26b-5p NO YES YES hsa-miR-299-3p YES YES NO hsa-miR-30a-5p YES YES NO hsa-miR-30b-5p YES YES NO hsa-miR-30c-5p YES YES NO hsa-miR-30d-5p YES YES NO hsa-miR-30e-5p YES YES NO hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-409-5p YES NO YES hsa-miR-425-5p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-9-5p YES YES YES hsa-miR-96-5p YES YES YES Display: