ctcRbase

Entry Detail

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General Information

Database ID: SKCM05578 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: LARP1B Full Name: La ribonucleoprotein domain family member 1B Category: mRNA Synonyms: LARP2 Chromosome: chr4 Strand: + Coordinate: Start Site(bp): 128061268 End Site(bp): 128222931 Gene Summary: This gene encodes a protein containing domains found in the La related protein of Drosophila melanogaster. La motif-containing proteins are thought to be RNA-binding proteins, where the La motif and adjacent amino acids fold into an RNA recognition motif. The La motif is also found in proteins unrelated to the La protein. Alternative splicing has been observed at this locus and multiple variants, encoding distinct isoforms, are described. Additional splice variation has been identified but the full-length nature of these transcripts has not been determined. [provided by RefSeq, Jun 2013] External Links: Ensembl ID: ENSG00000138709 HGNC ID: HGNC:24704 Entrez Gene: 55132

Expression Profile of LARP1B Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1297 YES YES NO hsa-miR-153-3p YES YES NO hsa-miR-15a-5p NO YES YES hsa-miR-15b-5p NO YES YES hsa-miR-16-5p NO YES YES hsa-miR-186-5p YES YES NO hsa-miR-192-5p YES YES NO hsa-miR-195-5p NO YES YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-215-5p YES YES NO hsa-miR-21-5p YES YES NO hsa-miR-217 YES YES NO hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-335-5p YES YES YES hsa-miR-361-5p YES YES NO hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-421 YES YES NO hsa-miR-424-5p NO YES YES hsa-miR-425-5p YES YES NO hsa-miR-429 YES YES YES hsa-miR-448 YES YES NO hsa-miR-489-3p YES NO YES hsa-miR-497-5p NO YES YES hsa-miR-543 YES YES NO hsa-miR-590-5p YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-758-3p YES YES NO hsa-miR-873-5p YES YES NO Display: