ctcRbase

Entry Detail

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General Information

Database ID: SKCM05615 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VPS45 Full Name: vacuolar protein sorting 45 homolog Category: mRNA Synonyms: H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 150067293 End Site(bp): 150145327 Gene Summary: Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene is a member of the Sec1 domain family, and shows a high degree of sequence similarity to mouse, rat and yeast Vps45. The exact function of this gene is not known, but its high expression in peripheral blood mononuclear cells suggests a role in trafficking proteins, including inflammatory mediators. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2013] External Links: Ensembl ID: ENSG00000136631 HGNC ID: HGNC:14579 Entrez Gene: 11311

Expression Profile of VPS45 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-122-5p YES YES NO hsa-miR-129-5p YES YES NO hsa-miR-135a-5p YES YES NO hsa-miR-135b-5p YES YES NO hsa-miR-1-3p YES YES YES hsa-miR-143-3p YES YES NO hsa-miR-148a-3p YES YES NO hsa-miR-148b-3p YES YES NO hsa-miR-152-3p YES YES NO hsa-miR-154-5p NO YES YES hsa-miR-206 YES YES YES hsa-miR-218-5p YES YES NO hsa-miR-24-3p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-326 YES YES NO hsa-miR-330-5p YES YES NO hsa-miR-491-5p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-599 YES YES NO hsa-miR-613 YES YES YES hsa-miR-876-5p YES YES NO Display: