Entry Detail



General Information

Database ID:SKCM05687
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:COCH
Full Name:cochlin
Category:mRNA
Synonyms:COCH-5B2|COCH5B2|DFNA9|DFNB110
Chromosome:chr14
Strand:+
Coordinate:
Start Site(bp):30874514End Site(bp):30895065
Gene Summary:The protein encoded by this gene is highly conserved in human, mouse, and chicken, showing 94% and 79% amino acid identity of human to mouse and chicken sequences, respectively. Hybridization to this gene was detected in spindle-shaped cells located along nerve fibers between the auditory ganglion and sensory epithelium. These cells accompany neurites at the habenula perforata, the opening through which neurites extend to innervate hair cells. This and the pattern of expression of this gene in chicken inner ear paralleled the histologic findings of acidophilic deposits, consistent with mucopolysaccharide ground substance, in temporal bones from DFNA9 (autosomal dominant nonsyndromic sensorineural deafness 9) patients. Mutations that cause DFNA9 have been reported in this gene. Alternative splicing results in multiple transcript variants encoding the same protein. Additional splice variants encoding distinct isoforms have been described but their biological validities have not been demonstrated. [provided by RefSeq, Oct 2008]
External Links:
Ensembl ID:ENSG00000100473
HGNC ID:HGNC:2180
Entrez Gene:1690



Expression Profile of COCH Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-133a-3p
YES
YES
NO
hsa-miR-133b
YES
YES
NO
hsa-miR-134-5p
YES
YES
NO
hsa-miR-185-5p
YES
YES
NO
hsa-miR-340-5p
YES
YES
NO
hsa-miR-361-5p
YES
YES
NO
hsa-miR-410-3p
YES
YES
NO
hsa-miR-448
YES
YES
NO
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