ctcRbase

Entry Detail

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General Information

Database ID: SKCM05781 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: PTBP2 Full Name: polypyrimidine tract binding protein 2 Category: mRNA Synonyms: PTBLP|brPTB|nPTB Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 96721665 End Site(bp): 96823738 Gene Summary: The protein encoded by this gene binds to intronic polypyrimidine clusters in pre-mRNA molecules and is implicated in controlling the assembly of other splicing-regulatory proteins. This protein is very similar to the polypyrimidine tract binding protein (PTB) but most of its isoforms are expressed primarily in the brain. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014] External Links: Ensembl ID: ENSG00000117569 HGNC ID: HGNC:17662 Entrez Gene: 58155

Expression Profile of PTBP2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p NO YES YES hsa-let-7b-5p NO YES YES hsa-let-7c-5p NO YES YES hsa-let-7d-5p NO YES YES hsa-let-7e-5p NO YES YES hsa-let-7f-5p NO YES YES hsa-let-7g-5p NO YES YES hsa-let-7i-5p NO YES YES hsa-miR-124-3p YES YES YES hsa-miR-128-3p NO YES YES hsa-miR-132-3p YES YES YES hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-1-3p YES YES NO hsa-miR-183-5p YES YES NO hsa-miR-18a-5p YES YES NO hsa-miR-18b-5p YES YES NO hsa-miR-196a-5p YES YES NO hsa-miR-196b-5p YES YES NO hsa-miR-199a-5p NO YES YES hsa-miR-199b-5p NO YES YES hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-206 YES YES NO hsa-miR-208a-3p YES YES YES hsa-miR-208b-3p YES YES YES hsa-miR-212-3p YES YES YES hsa-miR-223-3p YES YES YES hsa-miR-27a-3p NO YES YES hsa-miR-27b-3p NO YES YES hsa-miR-300 YES YES NO hsa-miR-376c-3p YES YES YES hsa-miR-381-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-384 YES YES NO hsa-miR-429 YES YES NO hsa-miR-448 YES YES NO hsa-miR-488-3p YES YES NO hsa-miR-499a-5p YES YES YES hsa-miR-501-3p YES NO YES hsa-miR-502-3p YES NO YES hsa-miR-505-3p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-520f-3p YES NO YES hsa-miR-542-3p YES YES NO hsa-miR-613 YES YES NO hsa-miR-9-5p YES YES YES hsa-miR-98-5p NO YES YES Display: