ctcRbase

Entry Detail

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General Information

Database ID: SKCM05874 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SDC2 Full Name: syndecan 2 Category: mRNA Synonyms: CD362|HSPG|HSPG1|SYND2 Chromosome: chr8 Strand: + Coordinate: Start Site(bp): 96493351 End Site(bp): 96611780 Gene Summary: The protein encoded by this gene is a transmembrane (type I) heparan sulfate proteoglycan and is a member of the syndecan proteoglycan family. The syndecans mediate cell binding, cell signaling, and cytoskeletal organization and syndecan receptors are required for internalization of the HIV-1 tat protein. The syndecan-2 protein functions as an integral membrane protein and participates in cell proliferation, cell migration and cell-matrix interactions via its receptor for extracellular matrix proteins. Altered syndecan-2 expression has been detected in several different tumor types. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000169439 HGNC ID: HGNC:10659 Entrez Gene: 6383

Expression Profile of SDC2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-103a-3p YES NO YES hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-107 YES NO YES hsa-miR-126-3p YES YES YES hsa-miR-132-3p YES YES YES hsa-miR-139-5p YES YES NO hsa-miR-141-3p YES YES YES hsa-miR-150-5p YES YES NO hsa-miR-17-5p YES YES NO hsa-miR-186-5p YES YES YES hsa-miR-199a-3p YES NO YES hsa-miR-199b-3p YES NO YES hsa-miR-200a-3p YES YES YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-212-3p YES YES YES hsa-miR-217 YES YES NO hsa-miR-218-5p YES YES YES hsa-miR-219a-2-3p YES NO YES hsa-miR-223-3p YES NO YES hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-25-3p YES YES YES hsa-miR-27a-3p YES NO YES hsa-miR-27b-3p YES NO YES hsa-miR-299-3p YES YES NO hsa-miR-300 YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-32-5p YES YES YES hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-363-3p YES YES YES hsa-miR-367-3p YES YES YES hsa-miR-375 YES YES NO hsa-miR-376c-3p YES YES YES hsa-miR-381-3p YES YES YES hsa-miR-429 YES YES YES hsa-miR-450a-5p YES YES NO hsa-miR-452-5p YES NO YES hsa-miR-495-3p YES YES YES hsa-miR-499a-5p YES YES YES hsa-miR-519d-3p YES YES NO hsa-miR-542-3p YES YES NO hsa-miR-760 YES NO YES hsa-miR-876-5p YES YES NO hsa-miR-92a-3p YES YES YES hsa-miR-92b-3p YES YES YES hsa-miR-93-5p YES YES NO hsa-miR-9-5p YES YES YES Display: