ctcRbase

Entry Detail

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General Information

Database ID: SKCM05882 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SOX13 Full Name: SRY-box 13 Category: mRNA Synonyms: ICA12|Sox-13 Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 204073115 End Site(bp): 204127743 Gene Summary: This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. It has also been determined to be a type-1 diabetes autoantigen, also known as islet cell antibody 12. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000143842 HGNC ID: HGNC:11192 Entrez Gene: 9580

Expression Profile of SOX13 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-138-5p YES YES NO hsa-miR-143-3p YES YES NO hsa-miR-185-5p YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-326 YES YES NO hsa-miR-329-3p YES NO NO hsa-miR-330-5p YES YES NO hsa-miR-362-3p YES NO NO hsa-miR-383-5p YES YES NO hsa-miR-495-3p YES YES YES hsa-miR-582-5p YES NO YES hsa-miR-873-5p YES YES NO hsa-miR-98-5p YES YES YES Display: