ctcRbase

Entry Detail

---



General Information

Database ID: SKCM05984 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SLC35A1 Full Name: solute carrier family 35 member A1 Category: mRNA Synonyms: CDG2F|CMPST|CST|hCST Chromosome: chr6 Strand: + Coordinate: Start Site(bp): 87470623 End Site(bp): 87512336 Gene Summary: The protein encoded by this gene is found in the membrane of the Golgi apparatus, where it transports nucleotide sugars into the Golgi. One such nucleotide sugar is CMP-sialic acid, which is imported into the Golgi by the encoded protein and subsequently glycosylated. Defects in this gene are a cause of congenital disorder of glycosylation type 2F (CDG2F). Two transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Dec 2009] External Links: Ensembl ID: ENSG00000164414 HGNC ID: HGNC:11021 Entrez Gene: 10559

Expression Profile of SLC35A1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1271-5p NO YES YES hsa-miR-128-3p YES YES NO hsa-miR-129-5p YES YES NO hsa-miR-135a-5p YES YES YES hsa-miR-135b-5p YES YES YES hsa-miR-136-5p YES YES NO hsa-miR-137 YES YES YES hsa-miR-141-3p YES YES NO hsa-miR-142-3p NO YES YES hsa-miR-155-5p YES YES NO hsa-miR-183-5p YES YES YES hsa-miR-197-3p YES YES NO hsa-miR-200a-3p YES YES NO hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-205-5p YES YES YES hsa-miR-329-3p YES YES NO hsa-miR-362-3p YES YES NO hsa-miR-377-3p NO YES YES hsa-miR-429 YES YES NO hsa-miR-496 YES YES NO hsa-miR-542-3p YES YES NO hsa-miR-543 YES YES NO hsa-miR-93-5p YES YES NO hsa-miR-96-5p NO YES YES Display: