Entry Detail



General Information

Database ID:SKCM06012
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:TRAF6
Full Name:TNF receptor associated factor 6
Category:mRNA
Synonyms:MGC:3310|RNF85
Chromosome:chr11
Strand:-
Coordinate:
Start Site(bp):36487027End Site(bp):36510272
Gene Summary:The protein encoded by this gene is a member of the TNF receptor associated factor (TRAF) protein family. TRAF proteins are associated with, and mediate signal transduction from, members of the TNF receptor superfamily. This protein mediates signaling from members of the TNF receptor superfamily as well as the Toll/IL-1 family. Signals from receptors such as CD40, TNFSF11/RANCE and IL-1 have been shown to be mediated by this protein. This protein also interacts with various protein kinases including IRAK1/IRAK, SRC and PKCzeta, which provides a link between distinct signaling pathways. This protein functions as a signal transducer in the NF-kappaB pathway that activates IkappaB kinase (IKK) in response to proinflammatory cytokines. The interaction of this protein with UBE2N/UBC13, and UBE2V1/UEV1A, which are ubiquitin conjugating enzymes catalyzing the formation of polyubiquitin chains, has been found to be required for IKK activation by this protein. This protein also interacts with the transforming growth factor (TGF) beta receptor complex and is required for Smad-independent activation of the JNK and p38 kinases. This protein has an amino terminal RING domain which is followed by four zinc-finger motifs, a central coiled-coil region and a highly conserved carboxyl terminal domain, known as the TRAF-C domain. Two alternatively spliced transcript variants, encoding an identical protein, have been reported. [provided by RefSeq, Feb 2012]
External Links:
Ensembl ID:ENSG00000175104
HGNC ID:HGNC:12036
Entrez Gene:7189



Expression Profile of TRAF6 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-124-3p
YES
YES
YES
hsa-miR-146a-5p
YES
YES
YES
hsa-miR-146b-5p
YES
YES
YES
hsa-miR-154-5p
YES
YES
NO
hsa-miR-194-5p
YES
YES
YES
hsa-miR-196a-5p
YES
YES
NO
hsa-miR-196b-5p
YES
YES
NO
hsa-miR-200b-3p
YES
YES
NO
hsa-miR-200c-3p
YES
YES
NO
hsa-miR-374a-5p
YES
YES
NO
hsa-miR-374b-5p
YES
YES
NO
hsa-miR-378a-3p
YES
YES
NO
hsa-miR-410-3p
YES
YES
NO
hsa-miR-421
YES
YES
YES
hsa-miR-422a
YES
YES
NO
hsa-miR-429
YES
YES
NO
hsa-miR-490-3p
YES
YES
NO
hsa-miR-506-3p
YES
YES
NO
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