ctcRbase

Entry Detail

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General Information

Database ID: SKCM06322 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: ATG16L1 Full Name: autophagy related 16 like 1 Category: mRNA Synonyms: APG16L|ATG16A|ATG16L|IBD10|WDR30 Chromosome: chr2 Strand: + Coordinate: Start Site(bp): 233210051 End Site(bp): 233295674 Gene Summary: The protein encoded by this gene is part of a large protein complex that is necessary for autophagy, the major process by which intracellular components are targeted to lysosomes for degradation. Defects in this gene are a cause of susceptibility to inflammatory bowel disease type 10 (IBD10). Several transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Jun 2010] External Links: Ensembl ID: ENSG00000085978 HGNC ID: HGNC:21498 Entrez Gene: 55054

Expression Profile of ATG16L1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7e-5p YES NO YES hsa-miR-106a-5p YES NO YES hsa-miR-106b-5p YES NO YES hsa-miR-1271-5p YES YES YES hsa-miR-1297 YES YES NO hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-142-3p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-17-5p YES NO YES hsa-miR-182-5p YES NO YES hsa-miR-191-5p YES YES NO hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-20a-5p YES NO YES hsa-miR-20b-5p YES NO YES hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-299-3p YES YES NO hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-302a-3p YES YES NO hsa-miR-302b-3p YES YES NO hsa-miR-302c-3p YES YES NO hsa-miR-302d-3p YES YES NO hsa-miR-302e YES YES NO hsa-miR-31-5p YES YES NO hsa-miR-372-3p YES YES NO hsa-miR-373-3p YES YES NO hsa-miR-377-3p YES YES NO hsa-miR-410-3p YES YES YES hsa-miR-454-3p YES YES YES hsa-miR-455-5p YES YES NO hsa-miR-519d-3p YES NO YES hsa-miR-520a-3p YES YES NO hsa-miR-520b YES YES NO hsa-miR-520c-3p YES YES NO hsa-miR-520d-3p YES YES NO hsa-miR-520e YES YES NO hsa-miR-625-5p YES NO NO hsa-miR-874-3p YES YES YES hsa-miR-93-5p YES NO YES hsa-miR-96-5p YES YES YES hsa-miR-98-5p YES NO YES Display: