ctcRbase

Entry Detail

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General Information

Database ID: SKCM06377 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: COL1A1 Full Name: collagen type I alpha 1 chain Category: mRNA Synonyms: EDSARTH1|EDSC|OI1|OI2|OI3|OI4 Chromosome: chr17 Strand: - Coordinate: Start Site(bp): 50183289 End Site(bp): 50201632 Gene Summary: Expression External Links: Ensembl ID: ENSG00000108821 HGNC ID: HGNC:2197 Entrez Gene: 1277

Expression Profile of COL1A1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-103a-3p YES YES NO hsa-miR-107 YES YES NO hsa-miR-129-5p YES NO YES hsa-miR-132-3p YES YES NO hsa-miR-133a-3p YES YES NO hsa-miR-133b YES YES NO hsa-miR-143-3p YES YES YES hsa-miR-185-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-193a-5p YES NO YES hsa-miR-196a-5p YES YES YES hsa-miR-196b-5p YES YES YES hsa-miR-212-3p YES YES NO hsa-miR-218-5p YES YES YES hsa-miR-29a-3p YES NO YES hsa-miR-29b-3p YES NO YES hsa-miR-29c-3p YES NO YES hsa-miR-300 YES YES NO hsa-miR-328-3p YES YES NO hsa-miR-335-5p YES YES NO hsa-miR-338-3p YES YES YES hsa-miR-371a-5p YES YES YES hsa-miR-376c-3p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-382-5p YES NO YES hsa-miR-532-3p YES NO YES hsa-miR-625-5p YES NO NO hsa-miR-9-5p YES YES NO hsa-miR-98-5p YES YES YES Display: