Entry Detail



General Information

Database ID:SKCM06399
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:SHOX2
Full Name:short stature homeobox 2
Category:mRNA
Synonyms:OG12|OG12X|SHOT
Chromosome:chr3
Strand:-
Coordinate:
Start Site(bp):158095954End Site(bp):158106503
Gene Summary:This gene is a member of the homeobox family of genes that encode proteins containing a 60-amino acid residue motif that represents a DNA binding domain. Homeobox genes have been characterized extensively as transcriptional regulators involved in pattern formation in both invertebrate and vertebrate species. Several human genetic disorders are caused by aberrations in human homeobox genes. This locus represents a pseudoautosomal homeobox gene that is thought to be responsible for idiopathic short stature, and it is implicated in the short stature phenotype of Turner syndrome patients. This gene is considered to be a candidate gene for Cornelia de Lange syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2009]
External Links:
Ensembl ID:ENSG00000168779
HGNC ID:HGNC:10854
Entrez Gene:6474



Expression Profile of SHOX2 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-18a-5p
YES
YES
NO
hsa-miR-18b-5p
YES
YES
NO
hsa-miR-625-5p
YES
NO
NO
hsa-miR-653-5p
YES
YES
NO
Display: