ctcRbase

Entry Detail

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General Information

Database ID: SKCM06426 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: WIPI2 Full Name: WD repeat domain, phosphoinositide interacting 2 Category: mRNA Synonyms: ATG18B|Atg21|CGI-50|WIPI-2 Chromosome: chr7 Strand: + Coordinate: Start Site(bp): 5190188 End Site(bp): 5233826 Gene Summary: WD40 repeat proteins are key components of many essential biologic functions. They regulate the assembly of multiprotein complexes by presenting a beta-propeller platform for simultaneous and reversible protein-protein interactions. Members of the WIPI subfamily of WD40 repeat proteins, such as WIPI2, have a 7-bladed propeller structure and contain a conserved motif for interaction with phospholipids (Proikas-Cezanne et al., 2004 [PubMed 15602573]).[supplied by OMIM, Mar 2008] External Links: Ensembl ID: ENSG00000157954 HGNC ID: HGNC:32225 Entrez Gene: 26100

Expression Profile of WIPI2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES NO YES hsa-let-7b-5p YES NO YES hsa-let-7c-5p YES NO YES hsa-let-7d-5p YES NO YES hsa-let-7e-5p YES NO YES hsa-let-7f-5p YES NO YES hsa-let-7g-5p YES NO YES hsa-let-7i-5p YES NO YES hsa-miR-124-3p YES NO YES hsa-miR-1271-5p YES NO YES hsa-miR-129-5p YES YES NO hsa-miR-1-3p YES NO YES hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-182-5p YES YES YES hsa-miR-186-5p YES YES YES hsa-miR-195-5p YES YES YES hsa-miR-199a-5p YES NO YES hsa-miR-199b-5p YES NO YES hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-206 YES NO YES hsa-miR-218-5p YES NO YES hsa-miR-28-5p YES YES NO hsa-miR-338-3p YES YES NO hsa-miR-361-5p YES YES NO hsa-miR-365a-3p YES YES NO hsa-miR-376a-3p YES NO YES hsa-miR-376b-3p YES NO YES hsa-miR-383-5p YES YES NO hsa-miR-421 YES YES NO hsa-miR-424-5p YES YES YES hsa-miR-429 YES YES NO hsa-miR-495-3p YES NO YES hsa-miR-497-5p YES YES YES hsa-miR-503-5p YES NO YES hsa-miR-613 YES NO YES hsa-miR-708-5p YES YES NO hsa-miR-7-5p YES YES NO hsa-miR-96-5p YES NO YES hsa-miR-98-5p YES NO YES Display: