Entry Detail



General Information

Database ID:SKCM06565
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:MBD5
Full Name:methyl-CpG binding domain protein 5
Category:mRNA
Synonyms:MRD1
Chromosome:chr2
Strand:+
Coordinate:
Start Site(bp):148021011End Site(bp):148516971
Gene Summary:This gene encodes a member of the methyl-CpG-binding domain (MBD) family. The MBD consists of about 70 residues and is the minimal region required for a methyl-CpG-binding protein binding specifically to methylated DNA. In addition to the MBD domain, this protein contains a PWWP domain (Pro-Trp-Trp-Pro motif), which consists of 100-150 amino acids and is found in numerous proteins that are involved in cell division, growth and differentiation. Mutations in this gene cause an autosomal dominant type of cognitive disability. The encoded protein interacts with the polycomb repressive complex PR-DUB which catalyzes the deubiquitination of a lysine residue of histone 2A. Haploinsufficiency of this gene is associated with a syndrome involving microcephaly, intellectual disabilities, severe speech impairment, and seizures. Alternatively spliced transcript variants have been found, but their full-length nature is not determined. [provided by RefSeq, Jul 2017]
External Links:
Ensembl ID:ENSG00000204406
HGNC ID:HGNC:20444
Entrez Gene:55777



Expression Profile of MBD5 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-106a-5p
YES
YES
YES
hsa-miR-106b-5p
YES
YES
YES
hsa-miR-142-5p
YES
NO
YES
hsa-miR-17-5p
YES
YES
YES
hsa-miR-200b-3p
YES
YES
NO
hsa-miR-200c-3p
YES
YES
NO
hsa-miR-20a-5p
YES
YES
YES
hsa-miR-20b-5p
YES
YES
YES
hsa-miR-33a-5p
YES
YES
NO
hsa-miR-425-5p
YES
YES
NO
hsa-miR-429
YES
YES
NO
hsa-miR-519d-3p
YES
YES
YES
hsa-miR-93-5p
YES
YES
YES
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