ctcRbase

Entry Detail

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General Information

Database ID: SKCM06626 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: NIPSNAP1 Full Name: nipsnap homolog 1 Category: mRNA Synonyms: - Chromosome: chr22 Strand: - Coordinate: Start Site(bp): 29554808 End Site(bp): 29581337 Gene Summary: This gene encodes a member of the NipSnap family of proteins that may be involved in vesicular transport. A similar protein in mice inhibits the calcium channel TRPV6, and is also localized to the inner mitochondrial membrane where it may play a role in mitochondrial DNA maintenance. A pseudogene of this gene is located on the short arm of chromosome 17. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2011] External Links: Ensembl ID: ENSG00000184117 HGNC ID: HGNC:7827 Entrez Gene: 8508

Expression Profile of NIPSNAP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7b-5p YES YES NO hsa-let-7d-5p YES YES NO hsa-let-7e-5p YES YES NO hsa-miR-143-3p YES YES YES hsa-miR-153-3p YES YES NO hsa-miR-182-5p YES YES NO hsa-miR-185-5p YES YES NO hsa-miR-214-3p YES YES NO hsa-miR-24-3p YES YES YES hsa-miR-296-3p YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-625-5p YES NO NO hsa-miR-876-5p YES YES NO Display: