ctcRbase

Entry Detail

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General Information

Database ID: SKCM07059 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SMARCD2 Full Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 Category: mRNA Synonyms: BAF60B|CRACD2|PRO2451|Rsc6p|SGD2 Chromosome: chr17 Strand: - Coordinate: Start Site(bp): 63832081 End Site(bp): 63843065 Gene Summary: The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and has sequence similarity to the yeast Swp73 protein. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000108604 HGNC ID: HGNC:11107 Entrez Gene: 6603

Expression Profile of SMARCD2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-143-3p YES YES YES hsa-miR-150-5p YES YES NO hsa-miR-153-3p YES YES YES hsa-miR-15a-5p YES YES NO hsa-miR-15b-5p YES YES NO hsa-miR-16-5p YES YES NO hsa-miR-186-5p YES NO NO hsa-miR-195-5p YES YES NO hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-208a-3p YES YES NO hsa-miR-208b-3p YES YES NO hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-324-5p YES YES NO hsa-miR-376c-3p YES YES NO hsa-miR-384 YES YES NO hsa-miR-424-5p YES YES NO hsa-miR-448 YES NO YES hsa-miR-454-3p YES YES YES hsa-miR-486-5p YES YES YES hsa-miR-497-5p YES YES NO hsa-miR-499a-5p YES YES NO hsa-miR-542-3p YES YES NO hsa-miR-876-5p YES YES NO hsa-miR-9-5p YES YES YES Display: