Entry Detail



General Information

Database ID:SKCM07212
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:CNTNAP1
Full Name:contactin associated protein 1
Category:mRNA
Synonyms:CASPR|CNTNAP|NRXN4|P190
Chromosome:chr17
Strand:+
Coordinate:
Start Site(bp):42682613End Site(bp):42699814
Gene Summary:The gene product was initially identified as a 190-kD protein associated with the contactin-PTPRZ1 complex. The 1,384-amino acid protein, also designated p190 or CASPR for 'contactin-associated protein,' includes an extracellular domain with several putative protein-protein interaction domains, a putative transmembrane domain, and a 74-amino acid cytoplasmic domain. Northern blot analysis showed that the gene is transcribed predominantly in brain as a transcript of 6.2 kb, with weak expression in several other tissues tested. The architecture of its extracellular domain is similar to that of neurexins, and this protein may be the signaling subunit of contactin, enabling recruitment and activation of intracellular signaling pathways in neurons. [provided by RefSeq, Jan 2009]
External Links:
Ensembl ID:ENSG00000108797
HGNC ID:HGNC:8011
Entrez Gene:8506



Expression Profile of CNTNAP1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-103a-3p
YES
YES
YES
hsa-miR-107
YES
YES
YES
hsa-miR-15a-5p
YES
YES
YES
hsa-miR-15b-5p
YES
YES
YES
hsa-miR-16-5p
YES
YES
YES
hsa-miR-186-5p
YES
YES
YES
hsa-miR-18a-5p
YES
YES
YES
hsa-miR-18b-5p
YES
YES
YES
hsa-miR-195-5p
YES
YES
YES
hsa-miR-340-5p
YES
YES
YES
hsa-miR-370-3p
YES
YES
YES
hsa-miR-410-3p
YES
YES
NO
hsa-miR-424-5p
YES
YES
YES
hsa-miR-448
YES
YES
YES
hsa-miR-495-3p
YES
YES
NO
hsa-miR-497-5p
YES
YES
YES
hsa-miR-503-5p
YES
YES
NO
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