ctcRbase

Entry Detail

---



General Information

Database ID: SKCM07328 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CSGALNACT2 Full Name: chondroitin sulfate N-acetylgalactosaminyltransferase 2 Category: mRNA Synonyms: CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT Chromosome: chr10 Strand: + Coordinate: Start Site(bp): 43138486 End Site(bp): 43185308 Gene Summary: This gene encodes a member of the chondroitin N-acetylgalactosaminyltransferase family. The encoded protein is involved in elongation during chondroitin sulfate synthesis. Alternative splicing of this gene results in multiple transcript variants. Two related pseudogenes have been identified on chromosome X. [provided by RefSeq, Feb 2016] External Links: Ensembl ID: ENSG00000169826 HGNC ID: HGNC:24292 Entrez Gene: 55454

Expression Profile of CSGALNACT2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-10a-5p YES YES NO hsa-miR-10b-5p YES YES NO hsa-miR-149-5p YES YES NO hsa-miR-204-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-217 YES YES YES hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-369-3p YES NO NO hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-377-3p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-487b-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-520f-3p YES NO YES hsa-miR-543 YES YES NO hsa-miR-653-5p YES YES YES hsa-miR-873-5p YES YES NO hsa-miR-875-5p YES YES NO hsa-miR-876-5p YES YES NO Display: