ctcRbase

Entry Detail

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General Information

Database ID: SKCM07342 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SP2 Full Name: Sp2 transcription factor Category: mRNA Synonyms: - Chromosome: chr17 Strand: + Coordinate: Start Site(bp): 47896150 End Site(bp): 47928957 Gene Summary: This gene encodes a member of the Sp subfamily of Sp/XKLF transcription factors. Sp family proteins are sequence-specific DNA-binding proteins characterized by an amino-terminal trans-activation domain and three carboxy-terminal zinc finger motifs. This protein contains the least conserved DNA-binding domain within the Sp subfamily of proteins, and its DNA sequence specificity differs from the other Sp proteins. It localizes primarily within subnuclear foci associated with the nuclear matrix, and can activate or in some cases repress expression from different promoters. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000167182 HGNC ID: HGNC:11207 Entrez Gene: 6668

Expression Profile of SP2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-122-5p YES NO YES hsa-miR-124-3p YES NO YES hsa-miR-128-3p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-136-5p YES NO YES hsa-miR-1-3p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-199a-5p YES NO YES hsa-miR-199b-5p YES NO YES hsa-miR-206 YES YES YES hsa-miR-299-5p YES NO YES hsa-miR-34a-5p YES YES YES hsa-miR-34c-5p YES YES YES hsa-miR-371a-5p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-411-5p YES YES YES hsa-miR-449a YES YES YES hsa-miR-449b-5p YES YES YES hsa-miR-506-3p YES NO YES hsa-miR-613 YES YES YES hsa-miR-876-5p YES YES YES Display: