ctcRbase

Entry Detail

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General Information

Database ID: SKCM07453 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SLITRK5 Full Name: SLIT and NTRK like family member 5 Category: mRNA Synonyms: LRRC11|bA364G4.2 Chromosome: chr13 Strand: + Coordinate: Start Site(bp): 87672615 End Site(bp): 87696272 Gene Summary: Members of the SLITRK family, such as SLITRK5, are integral membrane proteins with 2 N-terminal leucine-rich repeat (LRR) domains similar to those of SLIT proteins (see SLIT1; MIM 603742). Most SLITRKs, including SLITRK5, also have C-terminal regions that share homology with neurotrophin receptors (see NTRK1; MIM 191315). SLITRKs are expressed predominantly in neural tissues and have neurite-modulating activity (Aruga et al., 2003 [PubMed 14557068]).[supplied by OMIM, Mar 2008] External Links: Ensembl ID: ENSG00000165300 HGNC ID: HGNC:20295 Entrez Gene: 26050

Expression Profile of SLITRK5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES YES YES hsa-miR-1297 YES YES NO hsa-miR-1-3p YES YES NO hsa-miR-153-3p YES YES NO hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-206 YES YES NO hsa-miR-221-3p YES YES YES hsa-miR-222-3p YES YES YES hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-429 YES YES NO hsa-miR-448 YES YES NO hsa-miR-455-3p YES NO YES hsa-miR-455-5p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-613 YES YES NO Display: