ctcRbase

Entry Detail

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General Information

Database ID: SKCM07457 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VSNL1 Full Name: visinin like 1 Category: mRNA Synonyms: HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 Chromosome: chr2 Strand: + Coordinate: Start Site(bp): 17539126 End Site(bp): 17657018 Gene Summary: This gene is a member of the visinin/recoverin subfamily of neuronal calcium sensor proteins. The encoded protein is strongly expressed in granule cells of the cerebellum where it associates with membranes in a calcium-dependent manner and modulates intracellular signaling pathways of the central nervous system by directly or indirectly regulating the activity of adenylyl cyclase. Alternatively spliced transcript variants have been observed, but their full-length nature has not been determined. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000163032 HGNC ID: HGNC:12722 Entrez Gene: 7447

Expression Profile of VSNL1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-124-3p YES YES NO hsa-miR-1-3p YES YES NO hsa-miR-147a YES NO NO hsa-miR-148a-3p YES NO YES hsa-miR-148b-3p YES NO YES hsa-miR-152-3p YES NO YES hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-196a-5p YES YES YES hsa-miR-196b-5p YES YES YES hsa-miR-204-5p YES YES NO hsa-miR-206 YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-21-5p YES YES NO hsa-miR-22-3p YES NO YES hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-323a-3p YES NO YES hsa-miR-376a-3p YES YES NO hsa-miR-376b-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-411-5p YES YES NO hsa-miR-425-5p YES YES NO hsa-miR-455-3p YES NO YES hsa-miR-506-3p YES YES NO hsa-miR-543 YES YES NO hsa-miR-590-5p YES YES NO hsa-miR-599 YES YES NO hsa-miR-613 YES YES NO hsa-miR-98-5p YES YES YES Display: