ctcRbase

Entry Detail

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General Information

Database ID: SKCM07714 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SLITRK4 Full Name: SLIT and NTRK like family member 4 Category: mRNA Synonyms: - Chromosome: chrX Strand: - Coordinate: Start Site(bp): 143622790 End Site(bp): 143635777 Gene Summary: This gene encodes a transmembrane protein belonging to the the SLITRK family. These family members include two N-terminal leucine-rich repeat domains similar to those found in the axonal growth-controlling protein SLIT, as well as C-terminal regions similar to neurotrophin receptors. Studies of an homologous protein in mouse suggest that this family member functions to suppress neurite outgrowth. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2010] External Links: Ensembl ID: ENSG00000179542 HGNC ID: HGNC:23502 Entrez Gene: 139065

Expression Profile of SLITRK4 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1271-5p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-145-5p YES YES YES hsa-miR-154-5p YES YES NO hsa-miR-182-5p YES YES YES hsa-miR-188-5p YES NO YES hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-204-5p YES YES YES hsa-miR-211-5p YES YES YES hsa-miR-324-5p YES YES YES hsa-miR-340-5p YES YES YES hsa-miR-365a-3p YES YES NO hsa-miR-9-5p YES YES NO hsa-miR-96-5p YES YES YES Display: