ctcRbase

Entry Detail

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General Information

Database ID: SKCM07908 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: GALNT2 Full Name: polypeptide N-acetylgalactosaminyltransferase 2 Category: mRNA Synonyms: GalNAc-T2 Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 230057990 End Site(bp): 230282124 Gene Summary: This gene encodes a member of the glycosyltransferase 2 protein family. Members of this family initiate mucin-type O-glycoslation of peptides in the Golgi apparatus. The encoded protein may be involved in O-linked glycosylation of the immunoglobulin A1 hinge region. This gene may influence triglyceride levels, and may be involved Type 2 diabetes, as well as several types of cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2014] External Links: Ensembl ID: ENSG00000143641 HGNC ID: HGNC:4124 Entrez Gene: 2590

Expression Profile of GALNT2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES NO YES hsa-let-7b-5p YES NO YES hsa-let-7c-5p YES NO YES hsa-let-7d-5p YES NO YES hsa-let-7e-5p YES NO YES hsa-let-7f-5p YES NO YES hsa-let-7g-5p YES NO YES hsa-let-7i-5p YES NO YES hsa-miR-124-3p NO YES YES hsa-miR-1271-5p YES YES YES hsa-miR-182-5p YES NO YES hsa-miR-186-5p YES YES NO hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-224-5p YES YES NO hsa-miR-24-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-381-3p YES YES NO hsa-miR-429 YES YES YES hsa-miR-491-5p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-506-3p NO YES YES hsa-miR-96-5p YES YES YES hsa-miR-98-5p YES NO YES Display: