ctcRbase

Entry Detail

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General Information

Database ID: SKCM08066 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CAPN15 Full Name: calpain 15 Category: mRNA Synonyms: SOLH Chromosome: chr16 Strand: + Coordinate: Start Site(bp): 527717 End Site(bp): 554636 Gene Summary: This gene encodes a protein containing zinc-finger-like repeats and a calpain-like protease domain. The encoded protein may function as a transcription factor, RNA-binding protein, or in protein-protein interactions during visual system development. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000103326 HGNC ID: HGNC:11182 Entrez Gene: 6650

Expression Profile of CAPN15 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES YES hsa-miR-106b-5p YES YES YES hsa-miR-1323 YES NO NO hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-1-3p YES YES NO hsa-miR-149-5p YES YES NO hsa-miR-17-5p YES YES YES hsa-miR-206 YES YES NO hsa-miR-20a-5p YES YES YES hsa-miR-20b-5p YES YES YES hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-335-5p YES YES NO hsa-miR-519d-3p YES YES YES hsa-miR-548o-3p YES NO NO hsa-miR-613 YES YES NO hsa-miR-93-5p YES YES YES Display: