Entry Detail



General Information

Database ID:SKCM08073
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:PRUNE2
Full Name:prune homolog 2 with BCH domain
Category:mRNA
Synonyms:BMCC1|BNIPXL|C9orf65|KIAA0367
Chromosome:chr9
Strand:-
Coordinate:
Start Site(bp):76611376End Site(bp):76906087
Gene Summary:The protein encoded by this gene belongs to the B-cell CLL/lymphoma 2 and adenovirus E1B 19 kDa interacting family, whose members play roles in many cellular processes including apotosis, cell transformation, and synaptic function. Several functions for this protein have been demonstrated including suppression of Ras homolog family member A activity, which results in reduced stress fiber formation and suppression of oncogenic cellular transformation. A high molecular weight isoform of this protein has also been shown to colocalize with Adaptor protein complex 2, beta-Adaptin and endodermal markers, suggesting an involvement in post-endocytic trafficking. In prostate cancer cells, this gene acts as a tumor suppressor and its expression is regulated by prostate cancer antigen 3, a non-protein coding gene on the opposite DNA strand in an intron of this gene. Prostate cancer antigen 3 regulates levels of this gene through formation of a double-stranded RNA that undergoes adenosine deaminase actin on RNA-dependent adenosine-to-inosine RNA editing. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2015]
External Links:
Ensembl ID:ENSG00000106772
HGNC ID:HGNC:25209
Entrez Gene:158471



Expression Profile of PRUNE2 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-130a-3p
NO
YES
YES
hsa-miR-130b-3p
NO
YES
YES
hsa-miR-182-5p
NO
YES
YES
hsa-miR-183-5p
NO
YES
YES
hsa-miR-196a-5p
NO
YES
YES
hsa-miR-196b-5p
NO
YES
YES
hsa-miR-19a-3p
NO
YES
YES
hsa-miR-19b-3p
NO
YES
YES
hsa-miR-301a-3p
NO
YES
YES
hsa-miR-301b-3p
NO
YES
YES
hsa-miR-329-3p
NO
YES
YES
hsa-miR-339-5p
NO
YES
YES
hsa-miR-362-3p
NO
YES
YES
hsa-miR-410-3p
NO
YES
YES
hsa-miR-454-3p
NO
YES
YES
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