ctcRbase

Entry Detail

---



General Information

Database ID: SKCM08277 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: ZMYM3 Full Name: zinc finger MYM-type containing 3 Category: mRNA Synonyms: DXS6673E|MYM|XFIM|ZNF198L2|ZNF261 Chromosome: chrX Strand: - Coordinate: Start Site(bp): 71239624 End Site(bp): 71255146 Gene Summary: This gene is located on the X chromosome and is subject to X inactivation. It is highly conserved in vertebrates and most abundantly expressed in the brain. The encoded protein is a component of histone deacetylase-containing multiprotein complexes that function through modifying chromatin structure to keep genes silent. A chromosomal translocation (X;13) involving this gene is associated with X-linked cognitive disability. Several alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2010] External Links: Ensembl ID: ENSG00000147130 HGNC ID: HGNC:13054 Entrez Gene: 9203

Expression Profile of ZMYM3 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-125a-5p YES YES NO hsa-miR-125b-5p YES YES NO hsa-miR-129-5p YES YES NO hsa-miR-196a-5p YES YES NO hsa-miR-196b-5p YES YES NO hsa-miR-24-3p YES NO YES hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-300 YES YES NO hsa-miR-340-5p YES NO YES hsa-miR-346 YES YES NO hsa-miR-34a-5p YES YES NO hsa-miR-34c-5p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-384 YES YES NO hsa-miR-421 YES YES NO hsa-miR-449a YES YES NO hsa-miR-449b-5p YES YES NO hsa-miR-494-3p YES YES YES hsa-miR-495-3p YES YES YES hsa-miR-505-3p YES YES NO hsa-miR-542-3p YES YES NO hsa-miR-7-5p YES YES NO Display: