ctcRbase

Entry Detail

General Information

Database ID:	SKCM08292
Cancer Type:	melanoma
Dataset:	GSE38495
CTCs/CTM Isolation Method:	immunomagnetic purification

Gene Information

ncRNA Symbol:

CLSTN1

Full Name:

calsyntenin 1

Category:

mRNA

Synonyms:

Chromosome:

chr1

Strand:

Coordinate:

Start Site(bp):

9729026

End Site(bp):

9824526

Gene Summary:

This gene is a member of the calsyntenin family, a subset of the cadherin superfamily. The encoded transmembrane protein, also known as alcadein-alpha, is thought to bind to kinesin-1 motors to mediate the axonal anterograde transport of certain types of vesicle. Amyloid precursor protein (APP) is trafficked via these vesicles and so this protein is being investigated to see how it might contribute to the mechanisms underlying Alzheimer's disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]

External Links:

Ensembl ID:	ENSG00000171603
HGNC ID:	HGNC:17447
Entrez Gene:	22883

Expression Profile of CLSTN1 Gene

Regulatory Relationship

mRNA targets:

miRNA targets:

miRNA Name	PITA	miRanda	RNAhybrid
hsa-miR-101-3p	YES	YES	NO
hsa-miR-106a-5p	YES	YES	NO
hsa-miR-106b-5p	YES	YES	NO
hsa-miR-1197	YES	NO	YES
hsa-miR-135a-5p	YES	YES	NO
hsa-miR-135b-5p	YES	YES	NO
hsa-miR-144-3p	YES	YES	NO
hsa-miR-17-5p	YES	YES	NO
hsa-miR-185-5p	YES	YES	NO
hsa-miR-192-5p	YES	YES	YES
hsa-miR-193a-3p	YES	YES	YES
hsa-miR-193b-3p	YES	YES	YES
hsa-miR-20a-5p	YES	YES	NO
hsa-miR-20b-5p	YES	YES	NO
hsa-miR-214-3p	YES	YES	NO
hsa-miR-215-5p	YES	YES	YES
hsa-miR-223-3p	YES	YES	YES
hsa-miR-224-5p	YES	YES	NO
hsa-miR-299-3p	YES	YES	NO
hsa-miR-302a-3p	YES	YES	NO
hsa-miR-302b-3p	YES	YES	NO
hsa-miR-302c-3p	YES	YES	NO
hsa-miR-302d-3p	YES	YES	NO
hsa-miR-302e	YES	YES	NO
hsa-miR-372-3p	YES	YES	NO
hsa-miR-373-3p	YES	YES	NO
hsa-miR-519d-3p	YES	YES	NO
hsa-miR-520a-3p	YES	YES	NO
hsa-miR-520b	YES	YES	NO
hsa-miR-520c-3p	YES	YES	NO
hsa-miR-520d-3p	YES	YES	NO
hsa-miR-520e	YES	YES	NO
hsa-miR-93-5p	YES	YES	NO

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