ctcRbase

Entry Detail

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General Information

Database ID: SKCM08322 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SPECC1L Full Name: sperm antigen with calponin homology and coiled-coil domains 1 like Category: mRNA Synonyms: CYTSA|GBBB2|OBLFC1 Chromosome: chr22 Strand: + Coordinate: Start Site(bp): 24270817 End Site(bp): 24417740 Gene Summary: This gene encodes a coiled-coil domain containing protein. The encoded protein may play a critical role in actin-cytoskeletal reorganization during facial morphogenesis. Mutations in this gene are a cause of oblique facial clefting-1. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. A read-through transcript composed of SPECC1L (sperm antigen with calponin homology and coiled-coil domains 1-like) and the downstream ADORA2A (adenosine A2a receptor) gene sequence has been identified, but it is thought to be non-coding. [provided by RefSeq, Jun 2013] External Links: Ensembl ID: ENSG00000100014 HGNC ID: HGNC:29022 Entrez Gene: 23384

Expression Profile of SPECC1L Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES YES YES hsa-miR-181a-5p YES YES YES hsa-miR-181b-5p YES YES YES hsa-miR-181c-5p YES YES YES hsa-miR-181d-5p YES YES YES hsa-miR-185-5p YES YES YES hsa-miR-193a-3p YES NO YES hsa-miR-193b-3p YES NO YES hsa-miR-214-3p YES NO NO hsa-miR-218-5p YES YES YES hsa-miR-328-3p YES YES YES hsa-miR-338-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-425-5p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-655-3p YES NO YES Display: