ctcRbase

Entry Detail

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General Information

Database ID: SKCM08373 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SIX1 Full Name: SIX homeobox 1 Category: mRNA Synonyms: BOS3|DFNA23|TIP39 Chromosome: chr14 Strand: - Coordinate: Start Site(bp): 60643415 End Site(bp): 60658259 Gene Summary: The protein encoded by this gene is a homeobox protein that is similar to the Drosophila 'sine oculis' gene product. This gene is found in a cluster of related genes on chromosome 14 and is thought to be involved in limb development. Defects in this gene are a cause of autosomal dominant deafness type 23 (DFNA23) and branchiootic syndrome type 3 (BOS3). [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000126778 HGNC ID: HGNC:10887 Entrez Gene: 6495

Expression Profile of SIX1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-128-3p NO YES YES hsa-miR-141-3p NO YES YES hsa-miR-185-5p YES YES NO hsa-miR-200a-3p NO YES YES hsa-miR-200b-3p NO YES YES hsa-miR-200c-3p NO YES YES hsa-miR-23a-3p NO YES YES hsa-miR-23b-3p NO YES YES hsa-miR-27a-3p NO YES YES hsa-miR-27b-3p NO YES YES hsa-miR-30a-5p NO YES YES hsa-miR-30b-5p NO YES YES hsa-miR-30c-5p NO YES YES hsa-miR-30d-5p NO YES YES hsa-miR-30e-5p NO YES YES hsa-miR-429 NO YES YES hsa-miR-495-3p NO YES YES Display: