ctcRbase

Entry Detail

---



General Information

Database ID: SKCM08470 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SP4 Full Name: Sp4 transcription factor Category: mRNA Synonyms: HF1B|SPR-1 Chromosome: chr7 Strand: + Coordinate: Start Site(bp): 21428034 End Site(bp): 21514822 Gene Summary: The protein encoded by this gene is a transcription factor that can bind to the GC promoter region of a variety of genes, including those of the photoreceptor signal transduction system. The encoded protein binds to the same sites in promoter CpG islands as does the transcription factor SP1, although its expression is much more restricted compared to that of SP1. This gene may be involved in bipolar disorder and schizophrenia. [provided by RefSeq, May 2016] External Links: Ensembl ID: ENSG00000105866 HGNC ID: HGNC:11209 Entrez Gene: 6671

Expression Profile of SP4 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-128-3p YES YES YES hsa-miR-140-3p YES NO YES hsa-miR-141-3p YES YES YES hsa-miR-144-3p YES YES YES hsa-miR-154-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-200a-3p YES YES YES hsa-miR-205-5p YES YES YES hsa-miR-216a-5p YES YES YES hsa-miR-216b-5p YES YES YES hsa-miR-219a-5p YES YES YES hsa-miR-299-3p YES YES YES hsa-miR-300 YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-329-3p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-362-3p YES YES NO hsa-miR-374a-5p YES YES YES hsa-miR-374b-5p YES YES YES hsa-miR-376c-3p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-384 YES YES NO hsa-miR-410-3p YES YES YES hsa-miR-411-5p YES YES NO Display: