Entry Detail



General Information

Database ID:SKCM08553
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:SMG6
Full Name:SMG6, nonsense mediated mRNA decay factor
Category:mRNA
Synonyms:C17orf31|EST1A|SMG-6|hSMG5/7a
Chromosome:chr17
Strand:-
Coordinate:
Start Site(bp):2059839End Site(bp):2303771
Gene Summary:This gene encodes a component of the telomerase ribonucleoprotein complex responsible for the replication and maintenance of chromosome ends. The encoded protein also plays a role in the nonsense-mediated mRNA decay (NMD) pathway, providing the endonuclease activity near the premature translation termination codon that is needed to initiate NMD. Alternatively spliced transcript variants encoding distinct protein isoforms have been described. [provided by RefSeq, Feb 2014]
External Links:
Ensembl ID:ENSG00000070366
HGNC ID:HGNC:17809
Entrez Gene:23293



Expression Profile of SMG6 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-185-5p
YES
YES
NO
hsa-miR-217
YES
YES
NO
hsa-miR-329-3p
YES
NO
NO
hsa-miR-488-3p
YES
YES
NO
Display: