ctcRbase

Entry Detail

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General Information

Database ID: SKCM09019 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VCAN Full Name: versican Category: mRNA Synonyms: CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 Chromosome: chr5 Strand: + Coordinate: Start Site(bp): 83471465 End Site(bp): 83582303 Gene Summary: This gene is a member of the aggrecan/versican proteoglycan family. The protein encoded is a large chondroitin sulfate proteoglycan and is a major component of the extracellular matrix. This protein is involved in cell adhesion, proliferation, proliferation, migration and angiogenesis and plays a central role in tissue morphogenesis and maintenance. Mutations in this gene are the cause of Wagner syndrome type 1. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2009] External Links: Ensembl ID: ENSG00000038427 HGNC ID: HGNC:2464 Entrez Gene: 1462

Expression Profile of VCAN Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES NO YES hsa-miR-103a-3p NO YES YES hsa-miR-107 NO YES YES hsa-miR-124-3p YES YES YES hsa-miR-134-5p YES YES NO hsa-miR-135a-5p NO YES YES hsa-miR-135b-5p NO YES YES hsa-miR-136-5p YES YES YES hsa-miR-141-3p NO YES YES hsa-miR-144-3p YES NO YES hsa-miR-181a-5p NO YES YES hsa-miR-181b-5p NO YES YES hsa-miR-181c-5p NO YES YES hsa-miR-181d-5p NO YES YES hsa-miR-192-5p YES YES NO hsa-miR-200a-3p NO YES YES hsa-miR-215-5p YES YES NO hsa-miR-23a-3p NO YES YES hsa-miR-23b-3p NO YES YES hsa-miR-300 NO YES YES hsa-miR-33a-5p NO YES YES hsa-miR-33b-5p NO YES YES hsa-miR-340-5p NO YES YES hsa-miR-381-3p NO YES YES hsa-miR-421 YES YES NO hsa-miR-431-5p YES YES NO hsa-miR-455-5p NO YES YES hsa-miR-494-3p NO YES YES hsa-miR-506-3p YES YES NO hsa-miR-543 NO YES YES hsa-miR-758-3p YES YES NO hsa-miR-9-5p NO YES YES Display: