ctcRbase

Entry Detail

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General Information

Database ID: SKCM09035 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: MSI1 Full Name: musashi RNA binding protein 1 Category: mRNA Synonyms: - Chromosome: chr12 Strand: - Coordinate: Start Site(bp): 120341330 End Site(bp): 120369180 Gene Summary: This gene encodes a protein containing two conserved tandem RNA recognition motifs. Similar proteins in other species function as RNA-binding proteins and play central roles in posttranscriptional gene regulation. Expression of this gene has been correlated with the grade of the malignancy and proliferative activity in gliomas and melanomas. A pseudogene for this gene is located on chromosome 11q13. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000135097 HGNC ID: HGNC:7330 Entrez Gene: 4440

Expression Profile of MSI1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES NO YES hsa-miR-125a-5p YES YES YES hsa-miR-125b-5p YES YES YES hsa-miR-128-3p YES NO YES hsa-miR-137 YES YES YES hsa-miR-138-5p YES NO YES hsa-miR-144-3p YES YES YES hsa-miR-181a-5p YES YES YES hsa-miR-181b-5p YES YES YES hsa-miR-181c-5p YES YES YES hsa-miR-181d-5p YES YES YES hsa-miR-185-5p YES NO YES hsa-miR-191-5p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-299-3p YES YES YES hsa-miR-331-3p YES NO YES hsa-miR-342-3p YES YES YES hsa-miR-371a-5p YES YES NO hsa-miR-375 YES NO YES hsa-miR-377-3p YES YES NO hsa-miR-490-3p YES YES YES hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES NO YES hsa-miR-582-5p YES NO YES hsa-miR-802 YES NO YES Display: