ctcRbase

Entry Detail

---



General Information

Database ID: SKCM09038 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SALL1 Full Name: spalt like transcription factor 1 Category: mRNA Synonyms: HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 Chromosome: chr16 Strand: - Coordinate: Start Site(bp): 51135975 End Site(bp): 51151367 Gene Summary: The protein encoded by this gene is a zinc finger transcriptional repressor and may be part of the NuRD histone deacetylase complex (HDAC). Defects in this gene are a cause of Townes-Brocks syndrome (TBS) as well as bronchio-oto-renal syndrome (BOR). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000103449 HGNC ID: HGNC:10524 Entrez Gene: 6299

Expression Profile of SALL1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES YES hsa-miR-103a-3p YES YES YES hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-107 YES YES YES hsa-miR-132-3p YES YES YES hsa-miR-141-3p YES YES NO hsa-miR-144-3p YES YES YES hsa-miR-154-5p YES YES YES hsa-miR-155-5p YES YES YES hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-17-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-194-5p YES YES YES hsa-miR-195-5p YES YES YES hsa-miR-200a-3p YES YES NO hsa-miR-208a-3p YES YES NO hsa-miR-208b-3p YES YES NO hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-212-3p YES YES YES hsa-miR-214-3p YES YES NO hsa-miR-300 YES YES YES hsa-miR-32-5p YES YES NO hsa-miR-335-5p YES YES NO hsa-miR-338-3p YES YES YES hsa-miR-365a-3p YES YES YES hsa-miR-372-3p YES YES NO hsa-miR-376a-3p YES YES NO hsa-miR-376b-3p YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-424-5p YES YES YES hsa-miR-455-3p YES NO YES hsa-miR-488-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-497-5p YES YES YES hsa-miR-499a-5p YES YES NO hsa-miR-503-5p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-875-5p YES YES NO hsa-miR-93-5p YES YES NO Display: