Entry Detail



General Information

Database ID:SKCM09262
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:CLP1
Full Name:cleavage and polyadenylation factor I subunit 1
Category:mRNA
Synonyms:HEAB|hClp1
Chromosome:chr11
Strand:+
Coordinate:
Start Site(bp):57648992End Site(bp):57661868
Gene Summary:This gene encodes a member of the Clp1 family. The encoded protein is a multifunctional kinase which is a component of the tRNA splicing endonuclease complex and a component of the pre-mRNA cleavage complex II. This protein is implicated in tRNA, mRNA, and siRNA maturation. Mutations in this gene are associated with pontocerebellar hypoplasia type 10 (PCH10). Alternatively splice transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2014]
External Links:
Ensembl ID:ENSG00000172409
HGNC ID:HGNC:16999
Entrez Gene:10978



Expression Profile of CLP1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-let-7a-5p
YES
YES
YES
hsa-let-7b-5p
YES
YES
YES
hsa-let-7c-5p
YES
YES
YES
hsa-let-7d-5p
YES
YES
YES
hsa-let-7e-5p
YES
YES
YES
hsa-let-7f-5p
YES
YES
YES
hsa-let-7g-5p
YES
YES
YES
hsa-let-7i-5p
YES
YES
YES
hsa-miR-128-3p
YES
YES
YES
hsa-miR-132-3p
YES
YES
NO
hsa-miR-212-3p
YES
YES
NO
hsa-miR-340-5p
YES
YES
NO
hsa-miR-98-5p
YES
YES
YES
Display: