ctcRbase

Entry Detail

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General Information

Database ID: SKCM09306 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RNF40 Full Name: ring finger protein 40 Category: mRNA Synonyms: BRE1B|RBP95|STARING Chromosome: chr16 Strand: + Coordinate: Start Site(bp): 30761745 End Site(bp): 30776307 Gene Summary: The protein encoded by this gene contains a RING finger, a motif known to be involved in protein-protein and protein-DNA interactions. This protein was reported to interact with the tumor suppressor protein RB1. Studies of the rat counterpart suggested that this protein may function as an E3 ubiquitin-protein ligase, and facilitate the ubiquitination and degradation of syntaxin 1, which is an essential component of the neurotransmitter release machinery. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011] External Links: Ensembl ID: ENSG00000103549 HGNC ID: HGNC:16867 Entrez Gene: 9810

Expression Profile of RNF40 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-134-5p YES YES NO hsa-miR-1-3p YES NO YES hsa-miR-206 YES NO YES hsa-miR-24-3p YES YES YES hsa-miR-296-3p YES YES NO hsa-miR-300 YES YES YES hsa-miR-371a-5p YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-485-5p YES YES NO hsa-miR-613 YES NO YES Display: